Yossa Dwi Hartono

Yossa Dwi Hartono

Computational Biologist / Structural Bioinformatician

2020 book list

1 minute read

Published:

Hopefully in 2020 I will read even more!

Well, you know what, past me, something happened in 2020…
I would have to restart my reading habit again – it has been erratic recently.

2020

The Plague | Albert Camus Unfinished. Will borrow from the library again someday.

Newcomer | Keigo Higashino ⭑⭑⭑⭑ Quite a simple murder thriller case, actually, but the way it is written is very interesting. Higashino leads the reader through red herrings, which form self-contained stories themselves, before finally bringing us to the real clue that unravels the case.

The Obelisk Gate | N. K. Jemisin ⭑⭑⭑⭑ The Stone Sky | N. K. Jemisin ⭑⭑⭑⭑ Just wow. It is certain that we are heading towards a tragic ending, but somehow I am happy with the ending.

Quicksilver | Neal Stephenson Unfinished. Was expecting sci-fi but turns out it’s historical fiction. Stephenson’s repertoire is mind-bogglingly vast.

Story of your life and others | Ted Chiang ⭑⭑⭑⭑ I got ahold of this book coincidentally right after I watched Arrival. The titular short story is of course good and thought-provoking. Other stories in the collection are also gripping though. Ted Chiang definitely has a unique voice among sci-fi writers – there is some sort of… mysticism, sometimes? Which makes the narrative multi-facetedly richer.

The Fifth Season | N. K. Jemisin ⭑⭑⭑⭑ It is sci-fi and it is supernatural at the same time. “Earthbenders in climate-apocalyptic world” would be not so far off. Not a cheerful read for sure, especially when the erratic climate in the book could be one of the scenarios we are heading to. Looking forward to read the rest of the trilogy.

The Periodic Table | Primo Levi ⭑⭑⭑⭑ Interestingly structured memoir of Primo Levi, appearing as essays under the headings of the elements. Levi is a rare scientist-writer hybrid and his description of chemistry is beautifully poetic.

The meaning of marriage | Timothy Keller ⭑⭑⭑⭑⭑ A must read for a Christian, married or not yet. The content is probably not eye-opening for those who are already married, but it would still be good reminder. It is an eye-opener for me.

Leave a Comment

Your email address will not be published. Required fields are marked *

Markdown is supported.

You May Also Enjoy

Link roundup: 2024

1 minute read

Published:

Science
Chaos and cause

To fully appreciate what this means, heed a lesson from Fyodor Dostoyevsky’s great novel, The Brothers Karamazov (1880), which asks how a benevolent God could allow suffering. There is just one virtuous character in the novel, the monk Father Zosima, whose simple teaching, dictated through the genius of Dostoyevsky, sheds light on chaos, causation and difference-making:

See, here you have passed by a small child, passed by in anger, with a foul word, with a wrathful soul; you perhaps did not notice the child, but he saw you, and your unsightly and impious image has remained in his defenceless heart. You did not know it, but you may thereby have planted a bad seed in him, and it may grow, and all because you did not restrain yourself before the child, because you did not nurture in yourself a heedful, active love … for one ought to love not for a chance moment but for all time. Anyone, even a wicked man, can love by chance. My young brother asked forgiveness of the birds: it seems senseless, yet it is right, for all is like an ocean, all flows and connects; touch it in one place and it echoes at the other end of the world.

Parenting Storytelling: The Parenting Tool You Didn’t Know You Needed

Link roundup: Jan–Jun 2023

less than 1 minute read

Published:

Science
Go Ahead, Try to Explain Milk
Killer Heat Waves Are Coming
Science Shows Why Traditional Kimchi Making Works So Well
A New Approach to Computation Reimagines Artificial Intelligence
The Computer Scientist Peering Inside AI’s Black Boxes

Others
The Case Against Travel
How to Keep Life from Becoming a Parody of Itself: Simone de Beauvoir on the Art of Growing Older
Is Wine Fake?
The Sound of Home: Sonorous Desert by Kim Haines-Eitzen
The Meaning of Life
The Dao of Using Your Smartphone
Camus’s Atheism and the Virtues of Inconsistency
Fatal Distraction: Forgetting a Child in the Backseat of a Car Is a Horrifying Mistake. Is It a Crime?

Link roundup: Apr–Dec 2022

1 minute read

Published:

Science
Wood spirits: How Japan made the world’s first liquor from trees
The price of ‘sugar free’: are sweeteners as harmless as we thought?
A language model beats alphafold2 on orphans
https://github.com/FellowsFreiesWissen/computational_notebooks Why Conventional Wisdom About Cancer Can Be Misleading
Machine Learning to Handle the Proteome
‘The entire protein universe’: AI predicts shape of nearly every known protein
Could machine learning fuel a reproducibility crisis in science?
Blots on a field?
PNAS | Leveraging nonstructural data to predict structures and affinities of protein–ligand complexes
Breaking into the black box of artificial intelligence

Others
When a Houseplant Obsession Becomes a Nightmare
Book Review: What We Owe The Future
If Someone Is Typing, Then Stops … Can I Ask Why?

Link roundup: Jan–Mar 2022

2 minute read

Published:

Since these AIs are just giant matrix multiplication machines, “intuition” now has a firm grounding in math - just much bigger, more complicated math than the usual kind that we call “logical”.

This would be a common pattern for sciences: much worse at everyday tasks than people who do them intuitively, until it generates some surprising and powerful new technology. Democritus figured out what matter was made of in 400 BC, and it didn’t help a single person do a single useful thing with matter for the next 2000 years of followup research, and then you got the atomic bomb (I may be skipping over all of chemistry, sorry).
– What Are We Arguing About When We Argue About Rationality?

What he seeks to practice is, in a phrase popularized by the Marxist philosopher Antonio Gramsci, “pessimism of the intellect, optimism of the will.”
– Can Science Fiction Wake Us Up to Our Climate Reality?

Caulfield then introduced two different ways of thinking about how we engage with ideas when we’re on the internet: The web as a garden and the web as a stream. Think of the web as an organically developing garden: a space in which there’s no predetermined order or relationship of things to one another. Caulfield writes, “Every walk through the garden creates new paths, new meanings.” What came first in the garden doesn’t matter either. Each thing in the garden is related to the other things as it exists in the moment.
– The Faithful Gardener

Science
Dual use of artificial-intelligence-powered drug discovery
Twelve quick tips for software design
Computer Scientists Prove Why Bigger Neural Networks Do Better
Failing the test: DNA barcoding brought botanist Steven Newmaster scientific fame and entrepreneurial success. Was it all based on fraud?
What’s the buzz? Let’s talk about numbing ingredients
The pandemic’s true death toll: millions more than official counts
5 nutrition goals that are better than weight loss

Others
https://github.com/csinva/imodels
Synaesthetics
Transformative Experience and Pascal’s Wager
Do Good Doorbell Cams Make Good Neighbors?
How to Want Less
It’s Your Friends Who Break Your Heart
How to be useless
What We Don’t Want to Know
It’s Time for Some Game Theory
Why does woman have ‘man’ in it and female has the word ‘male’ in it?